{"id":64565,"date":"2016-04-10T09:08:14","date_gmt":"2016-04-10T13:08:14","guid":{"rendered":"http:\/\/1boringoldman.com\/?p=64565"},"modified":"2016-04-10T09:15:45","modified_gmt":"2016-04-10T13:15:45","slug":"the-making-of-wolf-alert-wolf-alert-part-1","status":"publish","type":"post","link":"https:\/\/1boringoldman.com\/index.php\/2016\/04\/10\/the-making-of-wolf-alert-wolf-alert-part-1\/","title":{"rendered":"<span class=\"small\"><em><font color=\"#7f6f57\">the making of<\/font><\/em><\/span> &laquo; wolf alert! wolf alert!&#8230; &raquo;  <span class=\"small\"><em><font color=\"#7f6f57\">part 1<\/font><\/em><\/span>"},"content":{"rendered":"\n<p align=\"justify\" class=\"small\">Usually when I write a blog post, I know what I want to say. I don&#8217;t like it when others wander around, so I try not to do it myself. But that&#8217;s not what happened with <a href=\"http:\/\/1boringoldman.com\/index.php\/2016\/04\/08\/wolf-alert-wolf-alert\/\">wolf alert! wolf alert!&hellip;<\/a>. A coauthor on the <a href=\"http:\/\/www.bmj.com\/content\/351\/bmj.h4320\" target=\"_blank\">Paxil Study 329<\/a> article had forwarded the <a href=\"http:\/\/journals.plos.org\/plosmedicine\/article?id=10.1371\/journal.pmed.1001946\" target=\"_blank\">PLOS article<\/a>. It was a short simple piece, but I thought it might be a springboard to contrast the&nbsp; approach to <font color=\"#200020\">Data Transparency<\/font> between the <font color=\"#0000ff\">European Medicines Agency <\/font>[<font color=\"#0000ff\">EMA]<\/font> and the more chaotic efforts here in the US. I particularly wanted to say something about the notion that <a href=\"https:\/\/clinicaltrials.gov\/\" target=\"_blank\">ClinicalTrials.gov<\/a> site and its <a href=\"https:\/\/clinicaltrials.gov\/ct2\/about-site\/results\" target=\"_blank\">Results Database<\/a> were resources. They may become that, but they sure aren&#8217;t right now. I wanted to mention two things: that they&#8217;re frequently not current with  missing results and they&#8217;re not checked for completeness even if present. Then I wanted to talk about the advantages of the <font color=\"#0000ff\">EMA<\/font> plan to release all the information submitted for approval. A short post about <em><font color=\"#200020\">a simple little article<\/font><\/em>.<\/p>\n<p align=\"justify\" class=\"small\">But I couldn&#8217;t seem to finish it. I&#8217;d write something&nbsp; and wander off. Coming back, I&#8217;d erase what I wrote and start over. That&#8217;s just not my M.O. and I went to bed with it open on my desktop. When I looked at it in the morning, I decided that I might be dawdling because I hadn&#8217;t really read the IOM Report, so I started reading. It only took a couple of pages to get to the part where they listed who was on the Committee. And my musing about my dawding came to an end. I finally got to what was bothering me. I dashed off the post [<a href=\"http:\/\/1boringoldman.com\/index.php\/2016\/04\/08\/wolf-alert-wolf-alert\/\">wolf alert! wolf alert!&hellip;<\/a>] having other things to do in the afternoon, and picked it up when I got home later in the evening.<\/p>\n<div align=\"justify\" class=\"small\">First, the <strong><font color=\"#200020\">PLOS Medicine<\/font><\/strong> article&#8230;<\/div>\n<blockquote>\n<div align=\"center\" class=\"big\"><a href=\"http:\/\/journals.plos.org\/plosmedicine\/article?id=10.1371\/journal.pmed.1001946\" target=\"_blank\">Sharing Individual Participant Data [IPD] within the Context of the Trial Reporting System [TRS]<\/a><\/div>\n<div align=\"center\" class=\"big\"><strong><font color=\"#500050\">PLOS Medicine<\/font><\/strong><\/div>\n<div align=\"center\" class=\"middle\"><strong><font color=\"#200020\">National Library of Medicine, National Institutes of Health<\/font><\/strong><\/div>\n<div align=\"center\" class=\"middle\">by Deborah A. Zarin and Tony Tse<\/div>\n<div align=\"center\" class=\"small\">January 19, 2016<\/div>\n<p align=\"center\"><img decoding=\"async\" border=\"0\" src=\"http:\/\/1boringoldman.com\/images\/snip.gif\" \/><\/p>\n<p align=\"justify\">A newly published reanalysis, part of the Restoring Invisible and Abandoned Trials [RIAT] initiative, was based on access to original case report forms for 34% of the 275 participants.  These highly granular IPD datasets enabled the researchers to  recategorize certain adverse events that they determined had been  miscategorized originally [e.g., &ldquo;mood lability&rdquo; rather than the more  serious &ldquo;suicidality&rdquo;]. The reanalysis concluded that Study 329 did not  show either efficacy or safety.<\/p>\n<p class=\"big\"><strong><font color=\"#200020\">How Would the Problems of Study 329 Be Addressed by the Current TRS?<\/font><\/strong><\/p>\n<p align=\"justify\">It  would be an oversimplification to conclude that this reanalysis  demonstrates the need to make IPD for all trials available. A more  nuanced look at the specific problems is useful. Many of the concerns  about Study 329 and the other Paxil studies might have been addressed if  current policies regarding registration and results reporting had been  in existence. The key issue that specifically required access to IPD was the  detection of miscategorization of some adverse events in the original  report&#8230;<\/p>\n<table cellspacing=\"0\" cellpadding=\"0\" border=\"0\" align=\"center\" width=\"400\" class=\"small\">\n<tr>\n<td align=\"center\" width=\"140\" valign=\"top\"><sup><strong><font color=\"#200020\">Key Issue<\/font><\/strong><\/sup><\/td>\n<td width=\"10\" valign=\"top\">&nbsp;<\/td>\n<td align=\"center\" width=\"90\" valign=\"top\"><sup><strong><font color=\"#200020\">Relevant TRS Component<\/font><\/strong><\/sup><\/td>\n<td width=\"10\" valign=\"top\">&nbsp;<\/td>\n<td align=\"center\" valign=\"top\"><sup><strong><font color=\"#200020\">Comment<\/font><\/strong><\/sup><\/td>\n<\/tr>\n<\/table>\n<p align=\"center\"><img decoding=\"async\" border=\"0\" src=\"http:\/\/1boringoldman.com\/images\/snip.gif\" \/><\/p>\n<table cellspacing=\"0\" cellpadding=\"0\" border=\"0\" align=\"center\" width=\"400\" class=\"small\">\n<tr>\n<td align=\"left\" width=\"140\" valign=\"top\"><sup>&nbsp;<\/sup><\/td>\n<td width=\"10\" valign=\"top\">&nbsp;<\/td>\n<td align=\"left\" width=\"90\" valign=\"top\"><strong><font color=\"#990000\"><sup>Summary Results Reporting<\/sup><\/font><\/strong><\/td>\n<td width=\"10\" valign=\"top\">&nbsp;<\/td>\n<td align=\"left\" valign=\"top\"><sup>Results database entries would have provided access to &quot;minimum reporting set&quot; including all prespecified outcome measures and all serious adverse events.<\/sup><\/td>\n<\/tr>\n<tr>\n<td colspan=\"5\">&nbsp;<\/td>\n<\/tr>\n<tr>\n<td align=\"left\" valign=\"top\"><sup>Detection of selective reporting bias of efficacy and safety findings in the published results of Study 329, unacknowledged changes in outcome measures, and other issues.<\/sup><\/td>\n<td valign=\"top\">&nbsp;<\/td>\n<td align=\"left\" valign=\"top\"><sup>Prospective Registration<\/sup><\/td>\n<td valign=\"top\">&nbsp;<\/td>\n<td align=\"left\" valign=\"top\"><sup>Archival registration information would have allowed for the detection of unacknowledged changes in prespecified outcome measures and detection of nonprespecified outcome measures reported as statistically significant.<\/sup><\/td>\n<\/tr>\n<tr>\n<td colspan=\"5\">&nbsp;<\/td>\n<\/tr>\n<tr>\n<td align=\"left\" valign=\"top\"><sup>&nbsp;<\/sup><\/td>\n<td valign=\"top\">&nbsp;<\/td>\n<td align=\"left\" valign=\"top\"><strong><font color=\"#990000\"><sup>Summary Results Reporting<\/sup><\/font><\/strong><\/td>\n<td valign=\"top\">&nbsp;<\/td>\n<td align=\"left\" valign=\"top\"><sup>Structured reporting devoid of interpretation or conclusions would have made summary data publicly available while avoiding the possibility of spinning the results.<\/sup><\/td>\n<\/tr>\n<tr>\n<td colspan=\"5\">&nbsp;<\/td>\n<\/tr>\n<tr>\n<td align=\"left\" valign=\"top\"><sup>Invalid and unacknowledged categorization of certain adverse events, resulting in the underreporting of suicidality<\/sup><\/td>\n<td valign=\"top\">&nbsp;<\/td>\n<td align=\"left\" valign=\"top\"><sup>Sharing Highly Granular IPD and Documents [CRFs]<\/sup><\/td>\n<td valign=\"top\">&nbsp;<\/td>\n<td align=\"left\" valign=\"top\"><sup>Access to high-granularity IPD enabled the elucidation of data analytic decisions that had not been publicly disclosed; reanalysis was possible with different methods of categorizing adverse events.<\/sup><\/td>\n<\/tr>\n<\/table>\n<p align=\"justify\">It  is important to note that this illuminating reanalysis required access  to the highly detailed IPD available in the original CRFs, represented  by the far-left side of the <em>x<\/em>-axis in Fig 1.  However, recent high-profile proposals for the sharing of IPD might not  have added any clarity in the case of the Paxil studies in children  beyond what could have been achieved with the optimal use of a registry  and results database [i.e., two foundational levels of the pyramid in Fig 2]. The reason is that journal publication serves as the &ldquo;trigger&rdquo; for IPD release in many of these proposals,  which could not possibly mitigate biases resulting from selective  publication in the first place [i.e., IPD from unpublished trials would  be exempt from sharing requirements]. In addition, such proposed IPD  policies call for the release of only the &ldquo;coded&rdquo; or &ldquo;analyzable&rdquo;  dataset, which would not have allowed for the detection of  miscategorization or the recategorization of the adverse events.  Finally, such proposals would only require the sharing of a subset of  IPD and documents for those aggregate data reported in the publication  and not the full dataset, precluding secondary analyses intended to go  beyond validation and reproducibility of the original publication.<\/p>\n<\/blockquote>\n<div align=\"justify\" class=\"small\">I hadn&#8217;t really said what needed saying about this idea of putting <font color=\"#200020\">ClinicalTrials.gov<\/font> at the center of our Clinical Trial system. So I want to redo my points from the last post:<\/div>\n<ul><span class=\"small\">            <\/p>\n<li>\n<div align=\"justify\"><strong><font color=\"#200020\">the <em>a priori<\/em> Protocol:<\/font><\/strong><br \/>        While the ClinicalTrials.gov write-up for a trial usually contains the PRIMARY and SECONDARY OUTCOME VARIABLES, it doesn&#8217;t have the full <em>a priori<\/em> protocol. It needs to be emphasized that this is a definitive outcome variable declaration and a harbinger of what&#8217;s going to be reported in the Results Database on the completion of the study. While some debate whether this declaration is &quot;binding&quot; [whether outcomes can be changed along the way as they were in Paxil Study 329], it&#8217;s<strong><font color=\"#770000\"> the <u>only<\/u> guard we have against someone running every imaginable analysis until they find one they like. <\/font><\/strong><\/div>\n<\/li>\n<li>\n<div align=\"justify\"><strong><font color=\"#200020\">the Results Database:<\/font><\/strong><br \/>        First, as I mentioned, this is the single most ignored requirement on the planet. And filling it out is no big deal. <strong><font color=\"#770000\">I would propose that one requirement for any submission to the FDA for approval or perhaps even for publication in a journal is a completed entry in the ClinicalTrials Results Database. <\/font><\/strong><\/div>\n<\/li>\n<li>\n<div align=\"justify\"><strong><font color=\"#200020\">the Statistical Analysis Plan:<\/font><\/strong><br \/>   My part of the Study 329 RIAT article was primarily the efficacy statistical analysis. And while the point that<em> <font color=\"#200020\">&quot;The key issue that specifically required access to IPD was the   detection of miscategorization of some adverse events in the original   report.&quot;<\/font><\/em> was indeed the central focus of our reanalysis, there was a less obvious but important finding in the efficacy analysis that required the full IPD to resolve. The original paper skipped the omnibus ANOVA analysis before making pairwise comparisons and there were many other gross statistical issues with the article&#8217;s &quot;rogue variables&quot; that didn&#8217;t make it into our paper, but were reported here [see <a href=\"http:\/\/1boringoldman.com\/index.php\/2015\/09\/17\/study-329-vii-variable-variables\/\" target=\"_blank\">study 329 vii &ndash; <em>variable<\/em> variables?&hellip;<\/a> thru <a href=\"http:\/\/1boringoldman.com\/index.php\/2015\/09\/29\/study-329-xii-premature-hair-loss\/\" target=\"_blank\">study 329 xii &ndash; premature hair loss&hellip;<\/a>]. While it didn&#8217;t matter in this instance, in many other cases it could be absolutely crucial.<strong><font color=\"#770000\"> <\/font><\/strong>If <font color=\"#200020\">ClinicalTrials.gov<\/font> is to be the definitive Summary Results Reporting mechanism, <strong><font color=\"#770000\">the details of the statistical analytic methods need to be specified in the original ClinicalTrials.gov write-up.<\/font><\/strong><\/div>\n<\/li>\n<p>   <\/span><span class=\"small\">   <\/span><\/ul>\n<div align=\"justify\" class=\"small\">Of the many lessons for me in the couple of years we spent on that paper, one of the the biggest was the power of the saying &quot;<em><font color=\"#200020\">the devil&#8217;s in the details<\/font><\/em>.&quot; Some of the things that are crystal clear now in just looking at the summary reports took going over the full IPD over and over to see them the first time. We repeated every analysis using the full complement of raw data, and it took that to locate many of the problems. I heartily agree with these authors that partial data access schemes are not much better than no access at all.  <\/div>\n<p align=\"justify\" class=\"small\">So part of my dawdling had to do with needing to add the things in this list to the paper&#8217;s discussion of <strong><font color=\"#200020\">How Would the Problems of Study 329 Be Addressed by the Current TRS?<\/font><\/strong>&nbsp; But that&#8217;s not all. There was something else that had me peppering that last post with pictures of a wolf in sheep&#8217;s clothing, and that&#8217;s why there&#8217;s a <font color=\"#200020\"><em>the making of<\/em> &laquo;<\/font> <strong><font color=\"#200020\">wolf alert! wolf alert!&#8230;<\/font><\/strong> <font color=\"#200020\">&raquo;  <em>part 2<\/em><\/font> just around the corner. But I wanted to say what I thought before looking at what the <font color=\"#200020\">Institute of Medicine<\/font> Committee thought in any detail&#8230; <\/p>\n<div align=\"center\" class=\"small\"><img loading=\"lazy\" decoding=\"async\" border=\"0\" width=\"180\" height=\"151\" src=\"http:\/\/1boringoldman.com\/images\/wolf-sheeps-clothing.gif\" \/><\/div>\n","protected":false},"excerpt":{"rendered":"<p>Usually when I write a blog post, I know what I want to say. I don&#8217;t like it when others wander around, so I try not to do it myself. But that&#8217;s not what happened with wolf alert! wolf alert!&hellip;. A coauthor on the Paxil Study 329 article had forwarded the PLOS article. It was [&hellip;]<\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"open","ping_status":"closed","sticky":false,"template":"","format":"standard","meta":{"_bbp_topic_count":0,"_bbp_reply_count":0,"_bbp_total_topic_count":0,"_bbp_total_reply_count":0,"_bbp_voice_count":0,"_bbp_anonymous_reply_count":0,"_bbp_forum_subforum_count":0,"footnotes":""},"categories":[5],"tags":[],"class_list":["post-64565","post","type-post","status-publish","format-standard","hentry","category-opinion"],"_links":{"self":[{"href":"https:\/\/1boringoldman.com\/index.php\/wp-json\/wp\/v2\/posts\/64565","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/1boringoldman.com\/index.php\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/1boringoldman.com\/index.php\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/1boringoldman.com\/index.php\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/1boringoldman.com\/index.php\/wp-json\/wp\/v2\/comments?post=64565"}],"version-history":[{"count":59,"href":"https:\/\/1boringoldman.com\/index.php\/wp-json\/wp\/v2\/posts\/64565\/revisions"}],"predecessor-version":[{"id":64627,"href":"https:\/\/1boringoldman.com\/index.php\/wp-json\/wp\/v2\/posts\/64565\/revisions\/64627"}],"wp:attachment":[{"href":"https:\/\/1boringoldman.com\/index.php\/wp-json\/wp\/v2\/media?parent=64565"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/1boringoldman.com\/index.php\/wp-json\/wp\/v2\/categories?post=64565"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/1boringoldman.com\/index.php\/wp-json\/wp\/v2\/tags?post=64565"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}